OBO Foundry dashboard analysis¶

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/tmp/ipykernel_7731/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

Turtle            38
RDF/XML Syntax    38
unknown            6
OWL/XML Syntax     2
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 78 2813.416667 10841.236686 0.0 108.75 425.0 1864.75 96738.0
Declaration 78 662.345238 1362.990047 0.0 75.75 271.0 671.00 11135.0
SubClassOf 74 767.404762 2662.476296 0.0 19.75 166.0 608.50 23882.0
ObjectPropertyRange 67 37.000000 63.823741 0.0 6.75 23.5 42.50 520.0
ObjectPropertyDomain 66 34.535714 63.094965 0.0 4.75 21.0 41.75 517.0
DataPropertyRange 58 11.607143 24.183544 0.0 0.00 4.0 10.00 170.0
SubObjectPropertyOf 57 47.535714 93.327051 0.0 0.00 12.0 63.25 709.0
InverseObjectProperties 56 11.095238 21.587379 0.0 0.00 3.0 9.00 126.0
DisjointClasses 50 165.892857 1338.740300 0.0 0.00 1.0 15.75 12277.0
DataPropertyDomain 50 13.083333 35.518944 0.0 0.00 2.0 6.25 235.0
ClassAssertion 49 105.309524 414.406499 0.0 0.00 1.0 20.00 3053.0
EquivalentClasses 43 106.904762 671.273500 0.0 0.00 1.0 30.50 6147.0
SubAnnotationPropertyOf 42 7.595238 14.784491 0.0 0.00 0.5 10.25 85.0
SubDataPropertyOf 37 7.738095 27.844715 0.0 0.00 0.0 5.25 242.0
TransitiveObjectProperty 36 3.595238 7.186197 0.0 0.00 0.0 5.00 38.0
AnnotationPropertyRangeOf 32 3.000000 6.125200 0.0 0.00 0.0 2.00 30.0
FunctionalDataProperty 27 1.630952 4.356908 0.0 0.00 0.0 2.00 26.0
SymmetricObjectProperty 27 2.714286 6.128290 0.0 0.00 0.0 2.50 35.0
FunctionalObjectProperty 27 1.964286 3.983237 0.0 0.00 0.0 2.00 18.0
InverseFunctionalObjectProperty 26 1.095238 2.427846 0.0 0.00 0.0 1.00 12.0
IrrefexiveObjectProperty 24 3.011905 6.792083 0.0 0.00 0.0 1.00 35.0
AsymmetricObjectProperty 20 2.142857 5.176739 0.0 0.00 0.0 0.00 22.0
DisjointUnion 18 7.226190 21.206018 0.0 0.00 0.0 0.00 116.0
ObjectPropertyAssertion 18 148.690476 916.779762 0.0 0.00 0.0 0.00 8133.0
SubPropertyChainOf 16 3.119048 14.848962 0.0 0.00 0.0 0.00 120.0
DataPropertyAssertion 15 82.428571 440.711563 0.0 0.00 0.0 0.00 3617.0
EquivalentObjectProperties 9 0.845238 4.143493 0.0 0.00 0.0 0.00 36.0
AnnotationPropertyDomain 9 0.238095 0.913342 0.0 0.00 0.0 0.00 6.0
DisjointObjectProperties 9 0.654762 2.538826 0.0 0.00 0.0 0.00 17.0
Rule 8 0.952381 3.636842 0.0 0.00 0.0 0.00 25.0
DifferentIndividuals 7 0.476190 2.817656 0.0 0.00 0.0 0.00 25.0
ReflexiveObjectProperty 6 0.107143 0.439547 0.0 0.00 0.0 0.00 3.0
SameIndividual 3 1.690476 12.997661 0.0 0.00 0.0 0.00 118.0
EquivalentDataProperties 1 0.059524 0.545545 0.0 0.00 0.0 0.00 5.0
NegativeObjectPropertyAssertion 1 0.011905 0.109109 0.0 0.00 0.0 0.00 1.0
DatatypeDefinition 1 0.011905 0.109109 0.0 0.00 0.0 0.00 1.0
DisjointDataProperties 1 0.023810 0.218218 0.0 0.00 0.0 0.00 2.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 78 2902.142857 9316.024375 0.0 130.5 866.0 2211.50 78469.0
ObjectUnionOf 52 13.059524 20.773797 0.0 0.0 2.5 16.00 88.0
ObjectAllValuesFrom 47 16.738095 30.397415 0.0 0.0 2.5 18.25 162.0
ObjectSomeValuesFrom 46 289.488095 1818.007750 0.0 0.0 4.0 80.00 16614.0
ObjectIntersectionOf 40 99.428571 679.812453 0.0 0.0 0.0 15.50 6217.0
ObjectExactCardinality 34 3.988095 9.968014 0.0 0.0 0.0 3.00 66.0
DataExactCardinality 28 2.285714 4.325802 0.0 0.0 0.0 3.00 18.0
ObjectComplementOf 23 3.678571 19.909531 0.0 0.0 0.0 1.00 179.0
DataSomeValuesFrom 20 1.785714 4.962683 0.0 0.0 0.0 0.00 33.0
DataAllValuesFrom 19 0.714286 1.639655 0.0 0.0 0.0 0.00 9.0
ObjectMinCardinality 19 1.309524 3.620478 0.0 0.0 0.0 0.00 19.0
ObjectHasValue 18 5.809524 28.234592 0.0 0.0 0.0 0.00 211.0
DataHasValue 17 21.214286 67.300633 0.0 0.0 0.0 0.00 494.0
ObjectMaxCardinality 13 11.285714 97.537583 0.0 0.0 0.0 0.00 894.0
ObjectOneOf 9 3.654762 29.669868 0.0 0.0 0.0 0.00 272.0
DataMinCardinality 7 0.226190 1.434104 0.0 0.0 0.0 0.00 13.0
DataMaxCardinality 6 1.190476 6.825671 0.0 0.0 0.0 0.00 59.0
ObjectHasSelf 1 0.011905 0.109109 0.0 0.0 0.0 0.00 1.0

OBO Score (Experimental)

ontology score score_dash score_impact
57 PROVO 0.324 0.504 0.143
42 OBO 0.322 0.549 0.095
25 FOAF 0.309 0.333 0.286
27 IAO 0.296 0.593 0.000
43 OEO 0.285 0.571 0.000
15 EMMO 0.275 0.549 0.000
54 PMDCO 0.275 0.549 0.000
77 nfdicore 0.275 0.549 0.000
6 CHAMEO 0.275 0.549 0.000
59 QUDT 0.275 0.549 0.000
20 EMMO_crystallography 0.275 0.549 0.000
22 EMMO_mechanical_testing 0.264 0.527 0.000
21 EMMO_mappings 0.252 0.504 0.000
2 BWMD-DOMAIN 0.252 0.504 0.000
62 SEMMD 0.252 0.504 0.000
19 EMMO_atomistic 0.252 0.504 0.000
18 EMMO_Datamodel 0.252 0.504 0.000
4 CCO 0.252 0.504 0.000
3 BWMD-MID 0.252 0.504 0.000
46 OIEmaterials 0.241 0.482 0.000
71 m4i 0.241 0.482 0.000
61 SAREF 0.241 0.482 0.000
47 OIEmodels 0.241 0.482 0.000
45 OIEmanufacturing 0.241 0.482 0.000
0 AMONTOLOGY 0.234 0.467 0.000
39 NPO 0.234 0.467 0.000
31 MDO 0.234 0.467 0.000
12 DEB 0.234 0.467 0.000
67 UO 0.234 0.467 0.000
30 MAMBO 0.234 0.467 0.000
65 SP 0.234 0.467 0.000
23 EMMO_microstructure 0.234 0.467 0.000
64 SO 0.234 0.467 0.000
41 OA 0.222 0.444 0.000
35 MSEO 0.222 0.444 0.000
37 MatOnto 0.222 0.444 0.000
75 mvc 0.222 0.444 0.000
38 MaterialsMine 0.222 0.444 0.000
9 CIF-core 0.222 0.444 0.000
13 DISO 0.222 0.444 0.000
26 GPO 0.222 0.444 0.000
72 mat 0.222 0.444 0.000
40 NanoMine 0.222 0.444 0.000
29 LPBFO 0.219 0.438 0.000
34 MOL_TENSILE 0.219 0.438 0.000
82 tribAIn 0.219 0.438 0.000
1 ASMO 0.200 0.400 0.000
10 CMSO 0.200 0.400 0.000
14 DSIM 0.200 0.400 0.000
5 CDCO 0.200 0.400 0.000
79 opmw 0.200 0.400 0.000
28 LDO 0.200 0.400 0.000
76 mwo 0.200 0.400 0.000
53 PLDO 0.200 0.400 0.000
24 EXPO 0.200 0.400 0.000
7 CHEMINF 0.200 0.400 0.000
80 periodictable 0.200 0.400 0.000
68 WILD 0.200 0.400 0.000
51 P-Plan 0.200 0.400 0.000
55 PODO 0.200 0.400 0.000
63 SKOS_MDO 0.189 0.378 0.000
33 MOL_BRINELL 0.189 0.378 0.000
44 OIEcharacterisation-methods 0.189 0.378 0.000
66 SSN 0.189 0.378 0.000
56 PRIMA 0.189 0.378 0.000
36 MSLE 0.189 0.378 0.000
81 ssos 0.189 0.378 0.000
48 OIEsoftware 0.189 0.378 0.000
50 OSMO 0.189 0.378 0.000
69 bmo 0.189 0.378 0.000
32 MDS 0.189 0.378 0.000
11 CSO 0.167 0.333 0.000
73 matinfo 0.167 0.333 0.000
60 QUDV 0.167 0.333 0.000
78 ontorule 0.155 0.311 0.000
83 vimmp 0.000 0.000 0.000
74 metal-alloy 0.000 0.000 0.000
49 OM 0.000 0.000 0.000
70 enanomapper 0.000 0.000 0.000
8 CHMO 0.000 0.000 0.048
58 Photovoltaics 0.000 0.000 0.000
52 PATO 0.000 0.000 0.107
16 EMMO_BVC 0.000 0.000 0.000
17 EMMO_BattINFO 0.000 0.000 0.000

OBO Score Summary

count mean std min 25% 50% 75% max
score 84.0 0.201631 0.078117 0.0 0.189 0.222 0.241 0.324
score_dash 84.0 0.396833 0.151006 0.0 0.378 0.441 0.482 0.593
score_impact 84.0 0.008083 0.037950 0.0 0.000 0.000 0.000 0.286

OBO dependency graph